The aroma of freshly baked bagels wafts through my kitchen, and suddenly, I’m transported to a cozy café where the pastries melt in your mouth. But here’s the best part: I’ve turned that dream into reality with my High-Protein Baked Bagels with Cottage Cheese. Not only are these bagels a breeze to make, but they also pack an impressive protein punch—perfect for fueling your morning or elevating lunch. With a satisfying crispy exterior and a delightfully soft center, they’ll have your taste buds dancing. Whether you’re seeking a gluten-free twist or eager to experiment with different flours, this easy recipe offers endless customization. Ready to embrace a healthier alternative to those fast-food cravings? Let’s dive into these tasty delights and discover just how simple bagel bliss can be!

Why Are These Bagels a Must-Try?
Simplicity: The recipe is easy to follow, making homemade bagels accessible to everyone, even beginner cooks.
High Protein: With 12 grams of protein per bagel, these treats are perfect for a nutritious breakfast or snack.
Versatile: Experiment with various flour types, like gluten-free or whole wheat, to suit your dietary needs and taste preferences!
Crowd-Pleasing: Whether served plain or topped with cream cheese and avocado, these bagels make for an impressive addition to any brunch spread.
Quick Prep: From mixing to baking, you can enjoy these delightful bagels in less than an hour, giving you more time to savor every bite!
Try pairing them with a refreshing Salad Bacon Cheese for a complete meal that both satisfy and delights your palate!
Baked Protein Bagels with Cottage Cheese Ingredients
For the Bagels:
• 1 cup (120g) unbleached all-purpose flour – Provides structure; substitute with gluten-free flour for a lighter option.
• 2 teaspoons baking powder – Acts as a leavening agent for fluffiness; always ensure it’s fresh!
• 1.25 cups 2% cottage cheese – Adds 12g of protein per bagel; you can use Greek yogurt for a tangy twist.
• 1 egg (beaten, for egg wash) – Gives a beautiful golden finish to your bagels.
For the Toppings (optional):
• Everything bagel seasoning – Adds a burst of flavor; it’s truly irresistible!
• Sesame seeds – A classic choice that provides a delightful crunch.
• Dried garlic flakes – Perfect for garlic lovers, enhancing the overall bagel experience.
Get ready to enjoy your delightful Baked Protein Bagels with Cottage Cheese, and don’t forget to share your delicious creations!
Step‑by‑Step Instructions for Baked Protein Bagels with Cottage Cheese
Step 1: Preheat the Oven
Begin by preheating your oven to 375°F (190°C). While it warms up, line a baking sheet with parchment paper to prevent the bagels from sticking. This essential first step sets the stage for those beautifully fluffy Baked Protein Bagels with Cottage Cheese, ensuring they bake evenly and develop that lovely golden crust.
Step 2: Combine Dry Ingredients
In a spacious mixing bowl, whisk together 1 cup of unbleached all-purpose flour and 2 teaspoons of baking powder until well combined. This simple mixture serves as the backbone of your bagels. Ensure your baking powder is fresh for optimal fluffiness; this will give your bagels that delightful lift and texture, ready to embrace the creamy cottage cheese.
Step 3: Mix in Cottage Cheese
Add 1.25 cups of 2% cottage cheese to the flour mixture. With a fork or your hands, gently mix until the dough starts to form a crumbly texture. It’s okay if it looks a bit uneven at this point! The cottage cheese will hydrate the flour, resulting in those deliciously high-protein Baked Protein Bagels, so don’t rush this step.
Step 4: Knead the Dough
Transfer the mixture onto a lightly floured surface, then use your hands to knead the dough gently. Aim for about 2-3 minutes until you form a smooth, slightly sticky ball resembling pizza dough. This process develops the gluten, which is key to the bagel’s wonderful chewiness. If the dough is too sticky, add a little more flour, but keep it light!
Step 5: Shape the Bagels
Divide the dough into four equal portions. Roll each portion into a smooth ball, then use your thumb to press a hole through the center, forming a classic bagel shape. Make sure the hole is large enough, as it will shrink during baking. Place the shaped bagels on your prepared baking sheet, giving them space to expand.
Step 6: Brush and Add Toppings
In a small bowl, beat one egg for an egg wash. Brush the tops of your bagels generously with the egg wash, which will create a golden, glossy finish as they bake. If desired, sprinkle on toppings such as everything bagel seasoning or sesame seeds for added flavor before placing them back on the baking sheet.
Step 7: Bake to Perfection
Slide the baking sheet into the oven and bake your Bagels for 25-30 minutes. Keep an eye on them; they should rise and turn a beautiful golden brown. The aroma that fills your kitchen is simply irresistible! Once they are done, a skewer inserted should come out clean, indicating fluffy perfection inside.
Step 8: Cool Before Slicing
Once baked, remove the bagels from the oven and let them cool on the baking sheet for about 15 minutes. This resting period is important, as it allows them to firm up slightly before slicing. You can also enjoy them warm from the oven, but wait just a bit to avoid burning your fingers!

Baked Protein Bagels with Cottage Cheese Variations
Get ready to make these flavorful bagels even more exciting with delightful substitutions and twists!
-
Gluten-Free: Use a gluten-free flour blend with xanthan gum for a deliciously light version that everyone can enjoy.
Let your loved ones delight in these fluffy treats without the gluten, ensuring no one misses out on the bagel goodness. -
Oat Flour: Swap in oat flour for a denser bagel that offers a delightful nuttiness and extra fiber.
This alternative adds a heartiness that can balance out sweetness if you decide to infuse ingredients like cinnamon or dried fruit. -
Whole Wheat: Try whole wheat flour for a healthier, nuttier flavor and extra nutrients.
While this will create a slightly different texture, the added fiber makes for a guilt-free indulgence! -
Greek Yogurt: Replace cottage cheese with Greek yogurt for a tangier flavor and even more protein.
Your bagels will take on a delightful creaminess, perfect for slathering with your favorite spreads. -
Sweet Twist: Create a sweet version by mixing in cinnamon, nutmeg, or even blueberries!
Imagine savoring a warm, spiced bagel paired with a smear of cream cheese—pure bliss. -
Herb Infusion: Incorporate fresh herbs like chives or dill into the dough for a flavor boost.
Herbs not only provide a fresh touch but also transform these bagels into a gourmet delight perfect for brunch. -
Extra Crunch: For some added texture, sprinkle chopped nuts or seeds into the dough before baking.
These crunchy elements will elevate your bagels, offering a delightful surprise with each bite.
If you’re craving something sweet on the side, consider pairing your bagels with a side of High Protein Frozen Peanut Butter Greek Yogurt Bites for a balanced and nourishing meal!
Make Ahead Options
These Baked Protein Bagels with Cottage Cheese are perfect for meal prep, allowing you to enjoy fresh bagels with minimal morning effort! You can prepare the dough up to 24 hours in advance by mixing your dry ingredients and incorporating the cottage cheese. Once you’ve shaped the bagels, store them covered in the refrigerator until ready to bake. To maintain their delicious texture, lightly dust them with flour before refrigerating to prevent sticking. When you’re ready to enjoy them, simply let the bagels come to room temperature while preheating the oven, then bake as directed for fresh, fluffy results that are just as delightful!
What to Serve with Baked Protein Bagels with Cottage Cheese
Imagine starting your day with these delightful bagels, paired perfectly to create a heartwarming breakfast experience.
- Creamy Avocado Spread: This buttery topping enhances the bagels’ protein with healthy fats, adding a creamy texture that complements every bite.
- Smoked Salmon: The rich, savory flavor of smoked salmon adds a luxurious touch, turning your bagels into a sophisticated brunch option. Serve with capers and red onion for a fresh twist!
- Fresh Fruit Salad: Bright and juicy, a fruit salad balances the savory bagels, giving your breakfast a refreshing aspect while offering natural sweetness.
- Herbed Cream Cheese: With a burst of flavor from fresh herbs, this spread amplifies the bagels’ creaminess. It’s a classic match that can’t be overlooked!
- Roasted Tomato Soup: Pairing with a warm bowl of soup creates a cozy comfort meal, where each bite of the bagel complements the acidity of the tomatoes beautifully.
- Nutty Granola: A crunchy topping turns your bagels into wholesome sandwiches, offering texture and flavor that pairs beautifully with cottage cheese. A drizzle of honey can add a sublime sweetness!
- Herbal Tea or Fresh Juice: Enhance your meal with a hot cup of herbal tea or a refreshing glass of fresh juice to cleanse the palate and invigorate your morning.
- Greek Yogurt Parfait: Layered with berries and granola, this parfait creates a protein-packed breakfast that balances textures and tastes perfectly alongside your bagels.
- Chocolate Hazelnut Spread: For a sweet twist, a thin layer of this spread transforms your bagels into a delightful treat, satisfying your sweet tooth while still being enjoyable!
- Chai Latte: This warming, spiced beverage not only complements the bagel’s flavors but also adds an aromatic experience to your morning, turning every bite into bliss.
How to Store and Freeze Baked Protein Bagels with Cottage Cheese
Fridge: Keep your bagels fresh in an airtight container for up to 5 days. This way, they remain delicious and perfect for quick breakfasts or snacks!
Freezer: For long-term storage, individually wrap each bagel in plastic wrap and place them in a freezer bag. They will stay fresh for up to 4 months, ready to be toasted whenever you crave that warm, fluffy goodness.
Reheating: To enjoy your frozen Baked Protein Bagels with Cottage Cheese, preheat your oven to 350°F (175°C) and bake for 10-15 minutes until heated through, or pop them in the toaster for a quicker option!
Expert Tips for Baked Protein Bagels
Fresh Ingredients: Ensure your baking powder is fresh to achieve the ideal rise and fluffiness in your baked protein bagels.
Mind the Dough: If the dough feels sticky, add flour gradually but avoid over-kneading to maintain that light texture.
Perfect Shapes: When shaping your bagels, make the hole in the center larger, as it will shrink during baking, preventing them from closing up.
Baking Time: For a more golden and crispy exterior, consider adding a few extra minutes to the baking time. Just keep an eye on them!
Customize Flavors: Feel free to experiment with different toppings or flour substitutions to suit your taste preferences, but remember that different flours yield unique textures in your baked protein bagels.

Baked Protein Bagels with Cottage Cheese Recipe FAQs
What kind of flour is best for these bagels?
Absolutely! For these Baked Protein Bagels with Cottage Cheese, unbleached all-purpose flour provides the best structure. If you’re looking for alternatives, a gluten-free blend with xanthan gum works great, or try oat flour for a moister option. Just remember, each type of flour can change the texture a little, so feel free to experiment!
How should I store the bagels?
To keep your bagels fresh, store them in an airtight container in the refrigerator for up to 5 days. This method preserves their deliciousness for quick breakfasts or snacks. But if you want to enjoy them longer, I recommend freezing them!
Can I freeze the bagels? If so, how?
Yes, you can freeze your Baked Protein Bagels with Cottage Cheese for up to 4 months! Wrap each bagel individually in plastic wrap, then place them into a freezer bag to prevent freezer burn. When you’re ready to enjoy one, just pop it into a preheated oven at 350°F (175°C) for about 10-15 minutes, or toast it for a quicker option. This will revive that fluffy goodness!
What if my dough is too sticky?
If your dough is feeling sticky, no worries! Start by adding a little more flour—about a tablespoon at a time. Knead gently until you reach a smooth consistency without overworking the dough, as this might result in incorrect texture. The goal is to keep that light, airy feel!
Are there any dietary considerations I should be aware of?
Absolutely! While this recipe is high in protein, it does contain dairy from the cottage cheese. If you’re catering to specific dietary needs, you can substitute the cottage cheese with Greek yogurt for a tangy flavor. For gluten-free options, make sure to choose a certified gluten-free flour, and always double-check labels for allergens. Enjoy your bagels while taking everyone’s needs into account!

Fluffy Baked Protein Bagels with Cottage Cheese Delight
Ingredients
Equipment
Method
- Preheat your oven to 375°F (190°C) and line a baking sheet with parchment paper.
- In a mixing bowl, whisk together the flour and baking powder until well combined.
- Add the cottage cheese to the flour mixture and mix until crumbly.
- Transfer the mixture to a floured surface and knead gently for about 2-3 minutes.
- Divide the dough into four portions, shape into balls, and press a hole in each to form bagels.
- Brush the bagels with the beaten egg and add toppings if desired.
- Bake for 25-30 minutes until golden brown.
- Let the bagels cool on the baking sheet for 15 minutes before slicing.
