There’s a certain magic that fills the air when fall rolls around, and these Apple Crumble Cupcakes are the perfect way to celebrate that cozy feeling. Imagine a tender, warmly spiced cupcake cradling a delightful apple filling, all topped off with a crunchy crumble that offers just the right amount of texture. These treats are not only an easy way to impress guests at your next gathering, but they also cater to various dietary needs with gluten-free and vegan options available. Whether you’re whipping them up for a family dessert, a cozy afternoon tea, or just as a personal indulgence, they’re sure to become a beloved addition to your autumn menu. Ready to dive into this sweet adventure? Let’s get baking!

Why Are Apple Crumble Cupcakes So Irresistible?
Deliciously Spiced: Each cupcake bursts with the warm flavors of cinnamon and nutmeg, perfectly capturing the essence of fall.
Versatile Treat: Enjoy them as is or customize with gluten-free and vegan substitutes that cater to everyone at your table.
Texture Perfection: The combination of moist cake with crunchy crumble creates a delightful experience in every bite.
Quick and Easy: These cupcakes can be thrown together in no time, making them a fantastic option for busy bakers.
Whether paired with a scoop of ice cream or enjoyed as a stand-alone treat, you’ll find these Apple Crumble Cupcakes to be a hit, reminiscent of traditional apple crumbles but in a fun, portable form. Don’t forget to check out our Chicken Pineapple Quesadillas for a delicious savory option to accompany your sweet treats!
Apple Crumble Cupcakes Ingredients
• Your ultimate guide to baking bliss!
For the Cupcake Batter
- All-Purpose Flour – Provides structure; substitute with gluten-free flour for a gluten-free option.
- Light Brown Sugar – Adds sweetness and a hint of caramel flavor; can be replaced with granulated sugar.
- Ground Cinnamon – Enhances flavor with warmth; use nutmeg as an alternative for extra warmth.
- Ground Nutmeg – Complements cinnamon for depth; can omit if preferred.
- Unsalted Butter (cold) – Essential for crumble texture; use vegan butter for a dairy-free version.
- Eggs – Binds and adds richness; can replace with an egg replacer for a vegan option.
- Vanilla Extract – Infuses flavor into the batter; optional but highly recommended.
- Sour Cream/Plain Yogurt – Adds moisture and richness to cupcakes; substitute with plant-based yogurt for a dairy-free version.
- Milk – Aids in cupcake batter texture; any milk variety works, including plant-based alternatives.
For the Apple Filling
- Medium Apples (Honeycrisp, Gala, Fuji) – Adds moisture and flavor; feel free to use any sweet-tart apple variety you like.
- Granulated Sugar – Provides sweetness for the apple filling; can be adjusted to taste.
- Lemon Juice – Balances sweetness in the apple filling; substitute with vinegar to maintain acidity.
For the Crumble Topping
- Powdered Sugar – For topping; optional for presentation.
- Additional Ingredients – A drizzle of caramel sauce enhances sweetness and visual appeal.
Now that you have the ingredients all lined up, you’re just a step away from creating these delightful Apple Crumble Cupcakes!
Step‑by‑Step Instructions for Apple Crumble Cupcakes
Step 1: Prepare Crumble Topping
Begin by whisking together 1 cup of all-purpose flour, ½ cup of light brown sugar, 1 teaspoon of ground cinnamon, and a pinch of ground nutmeg in a mixing bowl. Next, cut ½ cup of cold unsalted butter into the mixture until it resembles coarse crumbs. Once ready, refrigerate the crumble topping while you prepare the apple filling and cupcake batter.
Step 2: Make Apple Filling
In a separate bowl, combine 2 cups of diced medium apples with ¼ cup of granulated sugar, 1 tablespoon of lemon juice, ½ teaspoon of cinnamon, and 1 tablespoon of all-purpose flour. Mix until the apples are well coated and juicy. Set the apple filling aside to allow the flavors to meld while you prepare the cupcake batter.
Step 3: Preheat Oven
Preheat your oven to 350°F (175°C) and line a muffin tin with cupcake liners, ensuring to space them evenly. This step is crucial for achieving the perfect bake in your Apple Crumble Cupcakes. While the oven heats, you can move on to mixing the dry ingredients for the cupcake batter.
Step 4: Mix Dry Ingredients
In a bowl, whisk together 1 ½ cups of all-purpose flour, 1 ½ teaspoons of baking powder, ½ teaspoon of baking soda, and ½ teaspoon of salt. This blend will create a light texture in your cupcakes. Once combined, set the dry ingredients aside before moving on to the creaming process.
Step 5: Cream Butter and Sugar
Using a mixer, beat ½ cup of softened unsalted butter with ¾ cup of granulated sugar until the mixture is light and fluffy, about 3-5 minutes. Crack in 2 eggs one at a time, mixing well after each addition. Stir in 1 teaspoon of vanilla extract for a delightful flavor. This step will form the base of your Apple Crumble Cupcakes.
Step 6: Combine Mixtures
Gradually add the dry ingredient mixture to the creamed butter and sugar, alternating with ½ cup of sour cream and ½ cup of milk. Mix until just combined and avoid overmixing to keep your cupcakes light and fluffy. The batter should be smooth and slightly thick, as you prepare to assemble the cupcakes.
Step 7: Assemble Cupcakes
Spoon about 2 tablespoons of cupcake batter into each lined cup, filling them halfway. Next, add a generous spoonful of the prepared apple filling on top of the batter, followed by a sprinkle of the chilled crumble topping. This layering will ensure each cupcake has a delicious burst of flavor.
Step 8: Bake
Place the muffin tin in the preheated oven and bake for 20-25 minutes. Check for doneness by inserting a toothpick into the center; it should come out clean or with a few moist crumbs. Once baked, allow the Apple Crumble Cupcakes to cool in the tin for about 5 minutes before transferring them to a wire rack to cool completely.
Step 9: Garnish (Optional)
For an extra touch of indulgence, drizzle your cooled cupcakes with caramel sauce and dust lightly with powdered sugar just before serving. This not only enhances the flavors but also adds a beautiful finishing touch to your homemade Apple Crumble Cupcakes.

Apple Crumble Cupcakes Variations & Substitutions
Customize your baking adventure with these delightful twists and swaps that add unique flair to your Apple Crumble Cupcakes.
- Gluten-Free: Use a 1:1 gluten-free flour blend as a swap for all-purpose flour for a satisfying gluten-free treat.
- Vegan Option: Substitute eggs with a flaxseed meal or chia seed mix and use plant-based yogurt for a wholesome vegan cupcake.
- Nutty Delight: Fold in chopped walnuts or pecans for an extra crunch that complements the crumbly topping beautifully. Nothing says cozy like crunchy nuts added to warm cupcakes!
- Spice It Up: Experiment with ginger or cardamom in addition to cinnamon for a spicier flavor profile that warms the soul.
- Different Apples: Try swapping in tart Granny Smith apples for a refreshing twist or mix different varieties for a layered flavor experience.
- Flavor Infusion: Drizzle with salted caramel sauce instead of regular for a nice sweet and salty contrast that takes these cupcakes to another level.
- Mini Cupcakes: Bake in a mini muffin tin for bite-sized delights; the perfect choice for parties or indulgent snack time!
- Frosting Twist: Top with a swirl of cream cheese frosting instead of powdered sugar for a deliciously creamy finish that compliments the apple flavors.
The beauty of these Apple Crumble Cupcakes is that you can truly make them your own! Pair them with warm vanilla ice cream for a dessert experience that brings a little magic to your fall celebrations. And if you’re in the mood for more cozy flavors, check out our scrumptious Apple Pancake Cozy for a perfect morning companion!
What to Serve with Apple Crumble Cupcakes
Imagine serving these delightful cupcakes alongside a medley of complementary flavors that elevate every bite.
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Whipped Cream: A dollop of homemade whipped cream adds a light, airy contrast, making each cupcake even more indulgent.
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Vanilla Ice Cream: Serve warm cupcakes with a scoop of vanilla ice cream for a dreamy, melt-in-your-mouth experience that screams comfort.
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Hot Apple Cider: The warmth and spice of hot apple cider enhance the cozy vibes, making it a perfect drink companion for your autumn desserts.
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Autumn Salad: A fresh salad with crisp greens, candied walnuts, and a tangy vinaigrette balances the sweetness of the cupcakes beautifully.
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Caramel Sauce Drizzle: While you may already have caramel sauce on your cupcakes, serving extra on the side adds a luxurious touch for those who love a little extra sweetness.
Elevate your cupcake experience with these delightful pairings that cater to flavor, texture, and the joyful spirit of fall!
Storage Tips for Apple Crumble Cupcakes
Room Temperature: Keep your Apple Crumble Cupcakes in an airtight container for up to 3 days; they will stay delicious and fresh if stored properly.
Refrigerator: For longer freshness, store cupcakes in the fridge, where they can last for up to a week. Just make sure they’re well wrapped to prevent drying out.
Freezer: If you want to save some for later, freeze them in an airtight container or heavy-duty freezer bag for up to 3 months. Thaw in the fridge before serving.
Reheating: To enjoy chilled cupcakes, warm them in the microwave for about 10-15 seconds. This will rejuvenate the flavors and textures, making them just as delightful as freshly baked!
Make Ahead Options
These Apple Crumble Cupcakes are perfect for busy home cooks looking to save time without sacrificing flavor! You can prepare the crumble topping and apple filling up to 24 hours in advance. Simply whisk the dry ingredients for the crumble and cut in the butter before refrigerating it in an airtight container. For the apple filling, mix the diced apples with sugar, lemon juice, and spices, then store it separately in the fridge. When you’re ready to bake, simply assemble the cupcakes by filling the liners with batter, adding the chilled apple filling, and sprinkling the crumble on top, then bake as directed. This make-ahead method keeps your cupcakes just as delicious, ensuring you have a delightful fall treat ready with minimal effort!
Expert Tips for Apple Crumble Cupcakes
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Chill the Butter: Ensuring your butter is cold helps achieve that perfect crumble texture. Warm butter can lead to a greasy topping.
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Avoid Overmixing: Gently combine your batter to prevent dense cupcakes. Mixing too much incorporates extra air, which changes the texture.
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Cool Before Garnishing: Allow your Apple Crumble Cupcakes to cool completely before adding toppings to prevent melting and achieve a beautiful presentation.
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Quality Apples Matter: Use flavorful, sweet-tart apples like Honeycrisp or Fuji. Their natural sweetness enhances the overall taste.
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Customize for Everyone: Don’t hesitate to swap ingredients for gluten-free or vegan options. These Apple Crumble Cupcakes are versatile and can accommodate all dietary preferences.

Apple Crumble Cupcakes Recipe FAQs
How do I select the best apples for the filling?
Absolutely! When choosing apples for your Apple Crumble Cupcakes, opt for sweet-tart varieties like Honeycrisp, Gala, or Fuji. Look for apples that are firm and free of blemishes. The key is to find juicy apples that will add moisture and a delightful flavor to your cupcakes.
What is the best way to store leftover cupcakes?
To keep your Apple Crumble Cupcakes fresh, store them in an airtight container at room temperature for up to 3 days. If you want to extend their life, you can refrigerate them for up to a week, just make sure they’re well wrapped to prevent drying out.
Can I freeze Apple Crumble Cupcakes?
Very! To freeze your Apple Crumble Cupcakes, place them in an airtight container or a heavy-duty freezer bag. They can be stored in the freezer for up to 3 months. When ready to enjoy, simply transfer them to the refrigerator to thaw overnight. For a warm treat, microwave for about 10-15 seconds after thawing.
What’s the best way to prevent my cupcakes from being dense?
To avoid dense cupcakes, be careful not to overmix the batter; just mix until the dry ingredients are incorporated. Overmixing can introduce too much air, which alters the texture. Also, make sure your ingredients like butter and eggs are at room temperature, as this will help achieve a lighter, fluffier cupcake.
Can I make these cupcakes vegan?
Absolutely! You can replace eggs with an egg replacer, choose plant-based yogurt instead of sour cream, and use vegan butter for the crumble. For milk, any plant-based milk like almond or oat will work beautifully. Enjoy customizing these Apple Crumble Cupcakes to suit your dietary needs!
How can I tell when my cupcakes are done baking?
To check for doneness, insert a toothpick into the center of a cupcake. If it comes out clean or with a few moist crumbs, your Apple Crumble Cupcakes are ready! They usually bake in about 20-25 minutes. Allow them to cool in the muffin tin for 5 minutes before transferring to a wire rack.

Apple Crumble Cupcakes: Cozy Fall Treats to Savor
Ingredients
Equipment
Method
- Whisk together 1 cup of flour, ½ cup of light brown sugar, 1 teaspoon of cinnamon, and a pinch of nutmeg. Cut in ½ cup of cold butter until coarse crumbs form. Refrigerate.
- Combine 2 cups of diced apples, ¼ cup of granulated sugar, 1 tablespoon of lemon juice, ½ teaspoon of cinnamon, and 1 tablespoon of flour. Set aside.
- Preheat oven to 350°F (175°C) and line a muffin tin with cupcake liners.
- Whisk together 1 ½ cups of flour, 1 ½ teaspoons of baking powder, ½ teaspoon of baking soda, and ½ teaspoon of salt. Set aside.
- Beat ½ cup of butter with ¾ cup of sugar until fluffy. Add 2 eggs one at a time, then 1 teaspoon of vanilla extract.
- Add dry ingredients alternately with ½ cup of sour cream and ½ cup of milk. Mix until just combined.
- Spoon 2 tablespoons of batter into each liner, top with apple filling, and sprinkle crumble topping.
- Bake for 20-25 minutes. Cool in the tin for 5 minutes before transferring to a wire rack.
- Optionally drizzle with caramel sauce and dust with powdered sugar before serving.
